Nextflow workflow report

[jovial_snyder]

Workflow execution completed successfully!
Run times
30-May-2025 00:11:46 - 30-May-2025 12:05:17 (duration: 11h 53m 30s)
  2912 succeeded  
  0 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run main.nf -profile docker --input /home/marthasudermann/pathsurv_data/benchmark_exp/input_data_subset.csv --outdir /home/marthasudermann/pathsurv_data/output_dirs_benchmark/200_run2 --max_samples 200 -with-report -with-trace --data_dir /home/marthasudermann/pathsurv_data/k_pneumoniae
CPU-Hours
314.3
Launch directory
/home/marthasudermann/pathogensurveillance
Work directory
/home/marthasudermann/pathogensurveillance/work
Project directory
/home/marthasudermann/pathogensurveillance
Script name
main.nf
Script ID
bc051c1e8fb926e9fac6b7a23619801d
Workflow session
faac4731-38c3-45dc-a181-7a07ed3fdb2d
Workflow profile
docker
Nextflow version
version 24.10.0, build 5928 (27-10-2024 18:36 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)